All posts

The Hierarchy of Knowledge Structures in AI

Ergodic Team
27 Jan

Introduction

Artificial Intelligence (AI) systems become far more powerful and adaptable when they can interpret, reason about, and act upon contextual knowledge rather than just raw data. However, building context into AI is no trivial task. It requires a framework that systematically captures and organises domain information, from the simplest categorization schemes to sophisticated, adaptive representations of reality.

In this article, we examine four progressively richer forms of knowledge representation:

  • Taxonomies, which arrange concepts in hierarchical classifications,
  • Ontologies, which add formal relationships and logical rules,
  • Knowledge Graphs, which instantiate these relationships with real-world data at scale,
  • World Models, which extend knowledge graphs by incorporating dynamics, time, and predictive capabilities.

Each layer builds upon the last. A taxonomy provides a foundational structure; an ontology fleshes it out with semantics; a knowledge graph populates that ontology with real-world data; and finally, a world model enables dynamic reasoning about how these entities and relationships evolve over time.

Organisations that successfully integrate these layers—maintaining robust taxonomies, building meaningful ontologies, investing in knowledge graphs, and developing adaptive world models—are likely to gain a competitive edge. They can build AI systems that not only recognise patterns but truly understand and navigate the context in which they operate.

1. Taxonomies: The Foundation of Classification

A taxonomy offers a structured, hierarchical way to classify objects or concepts based on shared characteristics. A familiar example is the biological taxonomy (Kingdom → Phylum → Class → Order → Family → Genus → Species), which has long helped biologists make sense of the immense variety in the natural world.

At an organisational level, a taxonomy might separate a company’s data into categories such as “Customer Data,” “Product Data,” “Financial Data,” and so on. This clear, tree-like structure ensures that each concept has a single “home,” making it easy to browse and search. 

From a theoretical standpoint, taxonomies can be viewed as tree-like structures—or sometimes directed acyclic graphs (DAGs) if a concept can inherit from multiple parents—where each node represents a concept that becomes increasingly specific the farther down the hierarchy you go. In the strictest sense, a pure taxonomy imposes a single parent on each child, ensuring a clean, mutually exclusive classification at each level.

Taxonomies typically embody a top-down, enumerative approach. Domain experts define broad categories and then refine them into narrower subcategories, maintaining a consistent principle or set of criteria at each level. This structure facilitates:

  • Predictable Search and Navigation: The user or system traverses from a general category (e.g., “Financial Data”) down to a subcategory (e.g., “Quarterly Reports”).
  • Uniform Vocabulary and Consistency: By forcing each item to fit into exactly one slot at every level, ambiguity is minimised—although at times it might be overly constrained.
  • Simplicity: Taxonomies are conceptually simple to understand and maintain, particularly for stable, well-defined domains.

However, taxonomies alone can be restrictive. If an item needs to be in multiple categories, a simple hierarchy cannot always accommodate that.

Despite these limitations, taxonomies remain indispensable because they create a common vocabulary and fundamental structure for describing a domain’s key concepts. By defining top-level categories and subcategories, they pave the way for more advanced representations. Indeed, most ontologies start out as taxonomies—then extend and refine them with more complex relationships and logical rules.

2. Ontologies: Adding Semantics and Logical Structure

Where taxonomies define what the main groupings are, ontologies specify how these concepts relate, creating a richer and more formal semantic framework. An ontology still relies on classes to represent general concepts, but it goes beyond mere categorisation by introducing properties, constraints, and rules that govern the ways these classes can interact. This deeper structure is often underpinned by description logics, such as those used in the Web Ontology Language (OWL), and it enables systematic reasoning about the domain.

For example, consider a retail scenario. A taxonomy might categorise “Shirts,” “Pants,” and “Shoes.” An ontology would take this further by stating that:

  • A “Shoe” is a “WearableProduct,”
  • A “Shoe” has a “Size,”
  • Only a “Person” can wear a “Shoe,”
  • A “Vendor” can sell a “Shoe.”

One key theoretical aspect of ontologies is the open-world assumption, which holds that the absence of a fact does not imply its falsehood; it may simply be unknown to the system. This contrasts with the closed-world assumption common to many database schemas, where any statement not explicitly stored is considered false. Ontologies also commonly distinguish between two facets of knowledge: 

  • the TBox (or terminological box), which defines classes and constraints (e.g., “A Shoe is a subclass of WearableProduct”), and 
  • the ABox (or assertional box), which describes specific instances and their attributes (e.g., “Shoe123 is an instance of Shoe with Size 42”).

The crux of ontology-based systems lies in axioms that permit automated reasoning. In a retail scenario, a basic taxonomy might categorise products into “Shirts,” “Pants,” and “Shoes,” but an ontology refines this by asserting that a Shoe is a WearableProduct, has a Size, can only be worn by a Person, and can be sold by a Vendor. These axioms enable an inference engine to deduce new facts—such as “If X is a shoe and Y is a person, then Y can wear X”—or to flag contradictions, as in “Building wears a Shoe.” Compared to a simple hierarchical structure of a taxonomy, ontologies bring logical depth that addresses both hierarchical and contextual relationships, offering a robust basis for dynamic, data-rich AI systems.

By adopting OWL or similarly standardised frameworks, organisations can foster interoperability, enhance reasoning capabilities, and merge heterogeneous data sources into unified, logically consistent models that drive more advanced applications.

3. Knowledge Graphs: Bringing Data to Life

While ontologies define what relationships exist in a domain and how they ought to be interpreted, knowledge graphs (KGs) bring these definitions into a practical, data-driven reality. By merging information from diverse sources—customer databases, supply chain logs, social media streams—into a single, interconnected structure, knowledge graphs provide a powerful way to unify and contextualise knowledge for real-world applications.

A KG often takes the form of a graph database, allowing billions of facts (nodes and edges) to be stored, queried, and updated in near real-time. Two primary philosophies have emerged for these databases:

1.     Triple Stores (RDF-based): Built around the Resource Description Framework (RDF) model, these systems store data in the form of “subject–predicate–object” statements (triples) and typically leverage the SPARQL query language. They align closely with formal ontologies and open standards for interoperability, making them popular in Semantic Web and Linked Data initiatives.

2.     Property Graphs: Represent data as nodes and edges enriched with arbitrary properties (key-value pairs). Systems like Neo4j or those built on Apache TinkerPop/Gremlin often take this approach, providing more flexibility in modeling and easier onboarding for developers familiar with traditional object-oriented or relational paradigms.

Although these two paradigms share the ultimate goal of connecting and querying data, there has been a long-standing debate within the knowledge graph community about which approach is superior. Advocates of RDF emphasize its strict semantic formalism and standardised inference mechanisms, while property graph proponents point to developer ease-of-use and a more direct mapping between real-world business entities and the graph data model. In practice, the choice often depends on organisational needs—such as performance requirements, existing tools, and whether tight semantic consistency or open-world inference is a priority.

Despite these technical and philosophical differences, knowledge graphs in either form drive valuable AI-enabled capabilities. Recommendation systems, for example, can discover subtle patterns across user preferences or item attributes, offering more context-aware suggestions than simple collaborative filtering. Search engines rely on KGs to serve “instant answers” by connecting entities (people, places, events) and surfacing relationships that a traditional keyword-based index would overlook. Healthcare organisations consolidate patient data, research findings, and treatment guidelines into a KG to provide more holistic and evidence-based decision support.

Only after appreciating these practical benefits does the theoretical side emerge: in description logics, an ontology’s instance-level facts are often referred to as the ABox (assertional box). A knowledge graph can be seen as a large-scale realisation of this ABox, though in practice it may blend multiple schemas or partially aligned ontologies, while emphasising performance and scalability. The KG thus offers a framework for schema evolution and flexible enrichment, letting organisations adapt to new data sources and business requirements without redesigning the entire system.

Yet no domain remains static. As we explore next, world models build on knowledge graphs by addressing how entities and relationships evolve over time and why they change. By injecting temporal, causal, or predictive dimensions, a world model allows an AI system to continuously refine its view of reality—and plan or act accordingly—rather than treating the knowledge graph as a mere static snapshot of the present.

4. World Models: Adaptive, Predictive, and Process-Aware

World models extend the idea of a knowledge graph by factoring in dynamics, time, and causal relationships. Instead of merely describing what currently is, a world model aims to simulate or predict how things evolve and why they change. By incorporating process mining insights into a knowledge graph, the AI gains a detailed map of how tasks move through an organization, where delays occur, and how events tie together over time. This dynamic understanding helps guide everything from resource allocation to predictive maintenance schedules.

An AI system equipped with a world model can:

  • Account for Temporal Changes: Data points are not static. A product’s price may rise or fall, a customer might churn, and market demand might shift.
  • Make Predictions and Plans: Through simulation, it can explore “what-if” scenarios. For instance, “If the supply chain is delayed, how do we reallocate resources?”
  • Adapt and Update: It refines its internal representation as new data arrives, continuously improving its predictions.

While people often associate “world models” with robotic or 3D simulations, the term here refers more broadly to any holistic representation of an environment—including abstract or conceptual domains—where states evolve over time. In practice, a world model leverages the structured facts from the knowledge graph, applies relevant dynamics or causal rules, and uses these to guide decision-making under changing conditions.

The Value Proposition for AI

While world models are powerful, they often need a reasoning or interaction layer to truly drive enterprise AI use cases. Large Language Models (LLMs) are increasingly filling that role—acting as the “brains” that interpret and generate human-readable text. Combining LLM-based agents with knowledge structures like KGs and world models can significantly enhance an organisation’s decision-making and workflow automation. Building AI on top of these knowledge structures—taxonomies, ontologies, knowledge graphs, and world models—unlocks a range of strategic advantages. 

Deeper Reasoning and Explainability

When AI systems know why concepts relate and how they fit into a broader context, they can explain their inferences more effectively. Instead of providing a “black box” answer, a system might point to specific relationships or rules in the ontology and knowledge graph as evidence. World models add the ability to reference temporal factors or predicted outcomes, further clarifying complex decisions.

Dynamic, Contextual Decision-Making

Many AI applications, such as supply chain optimisation or financial forecasting, must adapt to changing conditions. By incorporating a world model, the AI can update its view of the environment in real time. This continuous adaptation leads to better situational awareness and proactive strategies, from adjusting production schedules to reallocating resources based on near-future projections.

Process Optimisation and Efficiency

With process mining incorporated into a world model, organisations can identify inefficiencies in their workflows, compare actual vs. intended processes, and re-engineer them for better outcomes. AI can simulate alternative process flows, test potential interventions, and predict future bottlenecks, leading to more streamlined operations overall.

Data Integration Across Silos

Enterprises often struggle with data scattered across multiple, poorly integrated systems. Taxonomies and ontologies help unify vocabularies and conceptual definitions. Knowledge graphs then merge siloed data under a common semantic layer, making cross-departmental queries and insights possible. Once that data is integrated, a world model can use it to simulate operational scenarios or refine targeted analytics, driving consistent and informed decision-making across the organization.

Personalised Experiences

Whether in e-commerce, entertainment, or educational platforms, personalising user experiences requires a rich understanding of individual preferences and context. Knowledge graphs store these relationships, while world models predict how user interests may evolve. This leads to recommendations that are not just relevant, but timely—anticipating user needs or shifting tastes before they even realize them.

Continuous Improvement

As AI systems gain the capacity to represent evolving states and incorporate feedback loops. Rather than retraining from scratch, a world model can integrate new observations into its existing structure, refining and improving its predictions over time. This ongoing refinement benefits everything from anomaly detection to strategic business forecasting.

Practical Considerations

Building and maintaining multi-layered knowledge structures is a substantial endeavor. Complexity can escalate quickly, particularly when working with ontologies or world models that depend on close collaboration between domain experts, data scientists, and software engineers. As knowledge graphs expand to billions of nodes and edges, ensuring performance and scalability becomes critical for real-world deployments. Nonetheless, recent trends and best practices are helping organisations overcome these challenges, accelerating the adoption of context-rich AI systems.

Neuro-Symbolic AI

A key advancement is the integration of deep learning and symbolic reasoning—often referred to as neuro-symbolic AI. Deep learning excels at pattern recognition in unstructured data (e.g., images, text), while symbolic methods (e.g., OWL-based ontologies) provide logical inference, consistency checks, and explainability. By combining these strengths, teams can build AI systems that not only achieve high accuracy but also maintain clear, auditable decision pathways—an especially important factor in regulated industries like finance or healthcare.

Automated Ontology Construction

Constructing and maintaining ontologies has traditionally been a labor-intensive process requiring specialised knowledge engineering tools. However, Natural Language Processing (NLP) and machine learning techniques now enable automated ontology construction by mining unstructured text for relevant concepts and relationships. This jumpstarts the ontology-building effort, while expert oversight fine-tunes the results. Best practices include using standardized Semantic Web technologies—such as RDF (Resource Description Framework) and OWL (Web Ontology Language)—which promote interoperability and make it easier to integrate with external data sources or reasoners.

Real-Time World Modeling

AI applications increasingly demand real-time updates to keep pace with ever-shifting data streams—think autonomous vehicles, industrial IoT, or just-in-time supply chains. By combining edge computing with streaming data pipelines, organisations can update their knowledge graphs and world models in near real-time, ensuring that downstream AI components always have the freshest data. This also involves robust data ingestion and transformation pipelines that can normalise disparate data sources into consistent semantic structures at scale.

Process-Centric LLM Orchestration

Many of today’s enterprise workflows can benefit from process mining—applying analytics to event logs (from ERP, CRM, or custom applications) to automatically discover, model, and optimise business processes. Once these processes are captured and validated (e.g., using conformance checking or performance analysis), LLM-based workflow engines can be layered on top:

  • Process Insights: A discovered process model indicates typical task sequences, bottlenecks, and dependencies.
  • LLM Orchestration: A large language model orchestrates tasks by referencing the world model. It can prompt users for approvals, generate suggestions, or trigger automated steps.
  • Adaptive Updating: The world model tracks changes or exceptions in real time, adjusting the orchestrated flow and informing the LLM whenever human intervention is needed.

Such a process-centric approach ensures that AI-powered decisions are grounded in validated operational realities. By blending human-in-the-loop oversight with automated reasoning, organisations can iterate rapidly, improving accuracy, responsiveness, and compliance across workflows.

Implementation Best Practices

  • Early Collaboration with Domain Experts: Involve stakeholders from the outset to define taxonomy categories, ontology axioms, and process constraints accurately.
  • Iterative Development: Start with a minimal, high-impact slice of the domain to demonstrate value quickly, then expand coverage.
  • Tooling and Standards: Use mature semantic technologies for ontology editing, OWL reasoners for consistency checks, and well-established process mining frameworks
  • Performance Monitoring: Continuously measure graph query latency, LLM response times, and system throughput. Employ caching, indexing, or graph partitioning strategies as needed
  • Continuous Learning and Refinement: Data drifting, new product lines, or regulatory updates can invalidate parts of your model. Regularly update ontologies, retrain ML components, and refine process models with fresh logs.

Organisations that embrace these technical best practices—supported by cross-functional teams and robust infrastructure—are best positioned to reap the benefits of context-rich, dynamic AI. By staying attuned to the evolving landscape of neuro-symbolic approaches, automated ontology tools, real-time pipelines, and process-centric LLM integration, they can consistently deliver intelligent solutions that bridge the gap between theoretical potential and practical business impact.

Conclusion

Taxonomies, ontologies, knowledge graphs, and world models represent a progressive hierarchy of knowledge representation that adds incremental layers of structure, semantics, real-world data, and dynamic, predictive power. By starting with a clear taxonomy of concepts, enriching it with an ontology’s logical rules, populating those rules with knowledge graph data, and finally elevating the entire framework into a dynamic world model, organisations give AI systems the contextual sophistication they need to make informed, flexible, and ultimately valuable decisions

Have Further Questions?

After reading this you may have further questions or want to learn more about what we are creating at Ergodic. Please feel free to book a meeting: Here!